Proton transfer has been intensively researched in the catalysis of reactions involving hydrogen, such as the hydrogen evolution reaction (HER), oxygen evolution reaction, and carbon dioxide reduction. Recently, two-dimensional (2D) materials have gained attention as catalysts for these reactions, and their catalytic effect upon changing the size, shape, thickness, and phase has been studied. However, there are no reports on the role of proton transfer in catalysis by 2D materials. Here, a novel way to enhance the catalytic effect of 2D MoS 2 was demonstrated via functionalization with four different organic moieties: phenyl-Me, phenyl-OMe, phenyl-OH, and phenyl-COOH groups. The role of proton transfer in 2D catalysis was carefully investigated via electrochemical kinetic analysis and electrical measurement. The best HER performance was observed with proton-donating COOH-functionalized active materials due to intramolecular proton transfer, which shows potential in hydrogen adsorption engineering using proton transfer. In addition, other molecularly functionalized 2D catalysts, including MoTe 2 and graphene, also show proton transfer due to the incorporation of organic moieties, providing enhanced HER performance.