The current study is focuses on a sustainable agricultural ecosystem for soil fertility and human health improvement. To estimate the effects of applying organic amendments (compost, vermicompost, biochar, organic manure and rapeseed cake) on crop growth of maize and nutrient uptake in calcareous soil, eleven treatments were studied, which included compost (CM), cow manure vermicompost (CMV), pig manure vermicompost (PMV), biochar vermicompost (BCV), biochar (BC), conventional synthetic fertilizers (NPK), CMV in addition to NPK (CMV + NPK), and PMV in addition to NPK (PMV + NPK), organic manure (OM), rapeseed cake (RC) and control without any fertilization (CK). Maize above and belowground biomass were analyzed in glass greenhouse experiments. The results showed that nitrogen and carbon contents showed significant differences among treatments. Vermicompost significantly showed higher biomass as compared to inorganic fertilizers except for RC. All vermicompost treatments also showed better nutrient availability as compared to NPK and CK. In conclusion, vermicompost with all substrates are recommended for application as organic fertilizers. Our study will help promote the application of organic fertilizers alone or in combination with inorganic fertilizers rather than only inorganic fertilizers for environmental health and sustainability.