Four proteomic biomarkers (human neutrophil peptide 1 [HNP1], HNP2 [defensins], calgranulin C [Cal-C], and Cal-A) characterize the fingerprint of intra-amniotic inflammation (IAI). We compared proteomic technology using surfaced-enhanced laser desorption-ionization-time of flight (SELDI-TOF) mass spectrometry to enzyme-linked immunosorbent assay (ELISA) for detection of these biomarkers. Amniocentesis was performed on 48 women enrolled in two groups: those with intact membranes (n ؍ 27; gestational age [GA], 26.0 ؎ 0.8 weeks) and those with preterm premature rupture of the membranes (PPROM; n ؍ 21; GA, 28.4 ؎ 0.9 weeks). Paired abdominal amniotic fluids (aAFs)-vaginal AFs (vAFs) were analyzed in PPROM women. Quantitative aspects of HNP1-3, Cal-C, Cal-A, and calprotectin (a complex of Cal-A with Cal-B) were assessed by ELISA. SELDI-TOF mass spectrometry tracings from 16/48 (33.3%) aAFs and 13/17 (88.2%) vAFs were consistent with IAI (three or four biomarkers present). IAI (by SELDI-TOF mass spectrometry) was associated with increased HNP1-3 and Cal-C measured by ELISA. However, immunoassays detected Cal-A in only 4 of the AFs even though its specific SELDI-TOF mass spectrometry peak was identified in 19/48 AFs. Calprotectin immunoreactivity was decreased in AFs retrieved from women with IAI (P ؍ 0.01). In conclusion, IAI is associated with increased HNP1-3 levels. In the absence of isoform-specific ELISAs, mass spectrometry remains the only way to discriminate the HNP biomarker isoforms. Monomeric Cal-A is not reliably estimated by specific ELISA as it binds to Cal-B to form the calprotectin complex. Cal-C was reliably measured by SELDI-TOF mass spectrometry or specific ELISA.Premature delivery (PTD; birth before 37 weeks in humans) is a significant public health problem. While complicating 7 to 12% of deliveries, prematurity is associated with 75% of infant mortality and 50% of long-term neurological handicaps, including blindness, deafness, developmental delay, cerebral palsy, and chronic lung disease (4,10,18,22). The etiologies of most preterm births remain unknown (2, 5).Clinically, PTD presents as either preterm labor with intact membranes or with preterm premature rupture of the membranes (PPROM). Several distinct pathophysiological pathways are implicated as triggers for PTD (21): excessive myometrial stretching, decidual hemorrhage, maternal and fetal stress, and inflammation (9). Inflammation may be initiated along various pathways of which infection is but one. Microbial invasion of the amniotic cavity, as evidenced by a positive amniotic fluid (AF) culture, occurs in 10% of the patients with preterm labor and intact membranes and in 38% of the patients with PPROM (25). We previously demonstrated that it is not necessarily the intrauterine infection that causes poor outcomes but rather the resulting intrauterine inflammation which can damage the fetus long before triggering labor (7). Thus, specific and sensitive tests for intrauterine inflammation rather than for bacterial infection may be more ...