2018
DOI: 10.1007/s00239-018-9868-2
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An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas

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Cited by 24 publications
(16 citation statements)
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“…4). Thus, we corroborated our previous results (Puzakov et al 2018) indicating that TLEWI elements represented a subfamily of Tc1 transposons. Additionally, we compared the exon-intron organization and the length of 21 TLEWI elements with their phylogeny.…”
Section: Evolutionary Relationship Between Tlewi Elements and Itm Trasupporting
confidence: 92%
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“…4). Thus, we corroborated our previous results (Puzakov et al 2018) indicating that TLEWI elements represented a subfamily of Tc1 transposons. Additionally, we compared the exon-intron organization and the length of 21 TLEWI elements with their phylogeny.…”
Section: Evolutionary Relationship Between Tlewi Elements and Itm Trasupporting
confidence: 92%
“…Despite the variability of TIRs, their terminy usually represent a TA dinucleotide target site duplication (TSD) (van Luenen and Plasterk 1994). ITm superfamily is divided into nine families: IS630, mariner, Tc1, pogo, maT, plants, mosquito, rosa and L31 (Shao and Tu 2001;Tellier et al 2015;Zhang et al 2016b;Puzakov et al 2018). The classification of ITm elements is based on phylogenetic analysis and, until recently, it was well correlated with structural features (the length of peptide chain between the second and the third amino acid residues of the catalytic DDE/D triad (Tellier et al 2015).…”
Section: Introductionmentioning
confidence: 99%
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“…A recent study of Tc1/mariner elements in the genome of the Pacific oyster Crassostrea gigas identified a new subfamily and a new family of elements. Specifically, these new groups were described as a: (i) a Mariner-18_ CGi-like group, DD37E(L18), which appeared to form a new subfamily within the Tc1 family; and, (ii) a Mariner-31_CGi-like group, DD37E(L31), that appeared to form a whole new family more basal to pogo [35]. We included the sequences from this analysis in our sequence alignment (Additional file 4), and found that: (i) the DD37E(L18) subfamily is present in the Tc1 family, but unfortunately it does not group together with Mariner-18_CGi (the C. gigas sequence it was named after) which occurs in Minos (Group 8, Additional File 2); while, (ii) the DD37E(L31) family shares a sister-group relationship with the Tec subfamily, and again unfortunately does not group together with Mariner-31_CGi, which groups as an isolated sequence with the minor families Tec, DD37E(L31), HvSm and TBE ( Fig.…”
Section: The Tc1 Familymentioning
confidence: 99%