We provide genetic evidence that the production of methanol in tomato fruit is regulated by pectin methylesterase (PME, EC 3.1.1.11), an enzyme that catalyzes demethoxylation of pectins. The role of PME in methanol production in tomato fruit was examined by relating the tissue methanol content to the PME enzymatic activity in wild-type Rutgers and isogenic PME antisense fruits with lowered PME activity. In the wild-type, fruit development and ripening were accompanied by an increase in the abundance of PME protein and activity and a corresponding ripening-related increase in methanol content. In the PME antisense pericarp, the level of methanol was greatly reduced in unripe fruit, and diminished methanol content persisted throughout the ripening process. The close correlation between PME activity and levels of methanol in fruit tissues from wildtype and a PME antisense mutant indicates that PME is the primary biosynthetic pathway for methanol production in tomato fruit. Interestingly, ethanol levels that were low and unchanged during ripening of wild-type tomatoes increased progressively with the ripening of PME antisense fruit. In vitro studies indicate that methanol is a competitive inhibitor of the tomato alcohol dehydrogenase (ADH, EC 1.1.1.1) activity suggesting that ADH-catalyzed production of ethanol may be arrested by methanol accumulation in the wild-type but not in the PME mutant where methanol levels remain low.Methanol is emitted by actively growing plant tissues (1) and ripening fruit (2). A major source of methanol may be pectin methyl esters (3) that are de-esterified to methanol and pectic substances by a PME 1 -catalyzed reaction (4). Although methanol production is correlated with PME activity in germinating seeds or other plant tissues (1), the role of PME in methanol accumulation in plants has not been firmly established (4,5).A developmentally regulated increase in PME gene expression occurs in developing tomato fruit (6) and may be used as a test system to relate PME activity to methanol metabolism. We have created transgenic tomato fruits with severely impaired expression of PME by introducing a fruit-specific PME antisense gene under the control of cauliflower mosaic virus 35S promoter (7). We compared methanol production in the wildtype and the PME antisense tomato fruits to examine whether the arrest of PME gene expression results in diminished production of methanol. Our results show that methanol accumulation in ripening tomato pericarp of either the wild-type or the PME antisense is related to PME activity, suggesting that the PME activity is the primary source of methanol production in tomato fruits. A surprising finding is that the tissue methanol and ethanol content in ripening tomato fruit were inversely related.