Background: β-glucosidases (BGLUs) hydrolyze the β-D-glycosidic bond with retention of anomeric configuration. BGLUs were associated with many aspects of plant physiological processes, in particular biotic and abiotic stresses through the activation of phytohormones and defense compounds. However, no comprehensive and systematic investigation on the stress- or hormone-responsive BGLU proteins had ever been reported in plant.Results: In this study, total 51 BGLU genes of the glycoside hydrolase family 1 were identified in one of the model legume plant Medicago truncatula genome, and they were classified into five distinct clusters. Sequence alignments revealed several conserved and characteristic motifs among these MtBGLU proteins. Analyses of their putative signal peptides and N-glycosylation site suggested that the majority of MtBGLU members have dual targeting to the vacuole/chloroplast. Many regulatory elements possibly related with phytohormones and/or abiotic stresses were identified in MtBGLU genes. Moreover, Microarray and qPCR analyses showed that these MtBGLU genes exhibited distinct expression patterns in various tissues, and in response to different abiotic stress and hormonal treatments. Notably, MtBGLU21, MtBGLU22, MtBGLU28, and MtBGLU30 in cluster I were dramatically activated by NaCl, PEG, IAA, ABA, SA and GA3 treatments.Conclusion: Collectively, our genome-wide characterization, evolutionary analysis, and expression pattern analysis of MtBGLU genes suggested that BGLU proteins play crucial roles in response to various abiotic stresses and hormonal cues in M. truncatula. This systematic analysis provided valuable information for the functional characterization and utilization of these MtBGLU genes in improving stress tolerance in M. truncatula and/or other plant species.