The nucleotide sequence of the glycoprotein genes of fully virulent Sindbis virus and derived mutants that have reduced neurovirulence for neonatal mice (attenuated mutants) has been determined. A single amino acid difference, arginine instead of serine at position 114 of the mature E2 glycoprotein, distinguished the prototype attenuated mutant from its virulent wild-type parent. Virulent revertants of the attenuated mutant showed same-site reversion to the wild-type sequence. An identical single amino acid substitution, an arginine for the serine at E2 position 114, was found in a second independently selected attenuated mutant. The strains are characterized by genetic linkage between attenuation, accelerated penetration of baby hamster kidney cells, and efficient neutralization by the E2-specifilc monoclonal antibodies R6 and R13; selection for change in one property simultaneously selected for change in the other two (Olmsted, R. A., Baric, Sindbis virus, the prototype member of the alphavirus genus (1), has been well studied with respect to pathogenesis in animals and replication in cell culture. A single plaqueforming unit of the virus inoculated into a newborn mouse is sufficient to cause acute encephalitis and death within 5 days (2, 3). A relatively simple structure (4) and high degree of virulence for newborn mice, as well as relatedness to important human and veterinary pathogens (1), make Sindbis virus infection of neonatal mice an appropriate system for the study of viral pathogenesis.One approach to an understanding of the complex process of pathogenesis is to begin with a specific and quantifiable phenotype related to disease. We have taken this approach in a study of viral virulence, using the measurable properties of percent mortality and mean survival time of neonatal ICR-L+ mice injected subcutaneously with Sindbis virus. Wild-type, virulent Sindbis virus infection of newborn mice by this route leads to 100% mortality and a mean survival time of 4-6 days. Mutant strains of Sindbis virus, developed by serial passage in baby hamster kidney (BHK) cells under stringent pressure for rapid growth, show reduced, or attenuated, virulence; mortality is always less than 100% and the mean survival time is 12-14 days (5). Comparison of attenuated and virulent viruses isolated during the passage series showed that attenuation in vivo was consistently correlated with accelerated penetration of BHK cells. Virulent revertants of the attenuated prototype strain SB-RL also reverted with respect to penetration rate. Rapid penetration was, thereby, identified as an in vitro marker for attenuation, and a mutant selected directly for accelerated penetration was attenuated (5). A second in vitro marker for attenuation was identified in studies with monoclonal antibodies raised to the attenuated SB-RL virus. Two of these antibodies, R6 and R13, which define epitopes on the E2 glycoprotein, preferentially neutralized the attenuated, fast-penetrating strains (5). A mutant of SB-RL selected for resistance to neut...