Human brain experiences vibration of certain frequency during various physical activities such as vehicle transportation and machine operation or accidents, which may cause traumatic brain injury or other brain diseases. However, little is known about what happened to brain after vibration stimuli. Here, with a custom-built electromagnetic actuator, vibration was induced in the brain while cerebral blood flow (CBF) and brain stiffness were measured at 20, 30, 40 Hz for 52 healthy volunteers. With increasing frequency, multiple regions of the brain showed increasingly reduced CBF, while the size of such regions also expanded. The vibration-induced CBF reduction regions largely fell inside the brain's default mode network (DMN), with about 58 or 46 % overlap at 30 or 40 Hz, respectively. By establishing a biomechanical co-variance network based on tissue stiffness, analysis of small-world properties and modularity showed an increased disruption of the network with increased frequency. These findings demonstrate frequency-dependent features of vibration modulation to brain. Furthermore, the overlap between CBF reduction regions and DMN, and the vibration-induced decrease of biomechanical network connections suggest a interweaved relationship between blood flow, tissue stiffness, and cognitive functions. These may provide critical insights into the mechanical stimulus to brain and vibration-induced brain pathologies.