Induced polarization (IP) is a widely used geophysical exploration technique. Continuous random noise is one of the most prevalent interferences that can seriously contaminate the IP signal and distort the apparent electrical characteristics. We propose a noise separation algorithm based on deep learning to overcome this issue. The standard IP signals are first produced by combining the Cole-Cole model and Fourier series decomposition, and then the mathematical simulation is used to generate various types of random noise interferences, which are subsequently added to the IP signals. Then, a de-noising auto-encoder deep neural network structure is built and trained by using noisy signals as input samples and pure signals as output samples. The resulting optimum network is capable of automatically reconstructing a clean IP signal from the noisy input. This network is tested using synthetic datasets. The trained neural network can perform the noise reduction of thousands of survey points in a matter of seconds and reduce signal distortion from about 25% to less than 5%. Deep-learning-based de-noising provides superior computation speed and precision compared to the wavelet de-noising and smoothing filtering approach. The data for high-quality signals do not vary considerably before and after noise reduction. The noise interferences are successfully suppressed for low-quality signals. Based on the findings, the de-noising auto-encoder deep neural network has a promising future for suppressing random noise interferences, which can aid in improving the quality of IP data with high efficiency and precision.