Conjugation of CS Oligosaccharides to 1,2-(Bisaminooxy)ethane for Microarray ProductionOzonolysis of the anomeric allyl group and linkage of CS compounds 1-4 1,2 to 1,2-(bisaminooxy)ethane 3 proceeded as follows: oligosaccharide (0.51 µmol) was dissolved in MeOH (500 µL) and cooled to -78 °C. O 3 was bubbled through the reaction until a blue color persisted (1 min). The reaction was then purged with N 2 until colorless, quenched with Ph 3 P beads (3 mg), and gradually warmed to rt over 12 h. It was filtered and the product concentrated to afford the desired aldehyde as a white solid. The aldehyde (0.51 µmol) was then reacted for 14 h at rt with 1,2-(bisaminooxy)ethane hydrochloride (1.4 mg, 15 µmol) that had been dissolved in H 2 O (100 µL) and pH adjusted to 5.0 with 1 M NaOH. The resulting oxime product was purified using a SepPak C18 column (500 mg, H 2 O) and Sephadex G-10 (CS-E The relative concentrations of the aminooxy oligosaccharides were calibrated to one another using the carbazole assay for uronic acid residues. 4 Briefly, the acid borate reagent (1.5 mL of 0.80 g sodium tetraborate, 16.6 mL H 2 O, and 83.3 mL H 2 SO 4 ) was added to 20-mL glass vials with Teflon caps. The
Carbohydrate MicroarraysSolutions of the aminooxy oligosaccharides (in 300 mM NaH 2 PO 4 , pH 5.0, 10 µL/well in a 384-well plate) were arrayed on Hydrogel Aldehyde slides (NoAb Biodiscoveries) by using a Microgrid II arrayer (Biorobotics) to deliver sub-nanoliter volumes at rt and 50% humidity. Concentrations of carbohydrates ranged from 0 -500 µM. The resulting arrays were incubated in a 70% humidity chamber at rt for 12 h and then stored in a low humidity, dust-free dessicator. The pH and reaction time were Non-specific attachment of CS oligosaccharides lacking the aminooxy linker (e.g., compounds 1-4) was not observed. Prior to use, the arrays were outlined with a hydrophobic pen (Super Pap Pen, Research Products International) to create a boundary for the protein treatments and rinsed three times with H 2 O. The slides were then blocked by treatment with NaBH 4 (125 mg) in 140 mM NaCl, 2.7 mM KCl, 5.4 mM Na 2 HPO 4 , and 1.8 mM KH 2 PO 4 (phosphate buffered saline, PBS, 50 mL) at rt for 5 min with gentle rocking and washed five times for 3 min with PBS. For all incubations, the slides were placed in a covered pipette tip box. Human TNF-α (Peprotech), FGF-1 (R&D Systems; both reconstituted to 2 µM in 0.1% Triton X-100 in PBS), cell culture supernatant containing monoclonal anti-CS-A antibody, or cell culture supernatant containing monoclonal anti-CS-E antibody (both 1:1 in 0.1% Triton X-100 in PBS) were spotted onto the slides in 250 µL quantities, and incubated statically at rt for 2 h. The slides were then washed as previously described and incubated with the appropriate primary antibody [anti-TNF-α (Peprotech) or anti-FGF-1 (R&D Systems); 1:1000 in 0.1% Triton X-100 in PBS] for 2 h at rt with gentle rocking. Following the incubation, the slides were washed as previously described and treated in the dark at rt with a seconda...