Otopetrins (Otop1-Otop3) comprise one of only two known eukaryotic proton-selective channel families. Otop1 is required for formation of otoconia and is a candidate mammalian sour taste receptor. Here, we report cryo-EM structures of zebrafish Otop1 and chicken Otop3 in lipid nanodiscs. The structures reveal a dimeric architecture of Otopetrins with each subunit consisting of twelve transmembrane helices divided into structurally related N and C domains. Cholesterol-like molecules occupy various sites in Otop1 and Otop3 and occlude a cavernous central tunnel. Two hydrophilic vestibules, as well as the intrasubunit interface between N and C domains, form conduits for water entry into the membrane plane in molecular dynamics simulations, suggesting they each could provide pathways for proton conduction. We also demonstrate the functional relevance of a salt bridge in the C domain vestibule by mutagenesis. Our results provide a structural basis for understanding the function of the Otopetrin proton channel family.
Main TextProton channels mediate the passage of protons across cell membranes, thereby regulating the cellular and extracellular pH as well as membrane potential 1 . The diverse biological roles of proton channel activity include the triggering of bioluminescence in dinoflagellates 2 , regulation of pH in lung epithelia 3 , and the detection of sour taste 4-6 .Knowledge of proton channel physiology and molecular mechanisms is largely derived from, and limited to, the M2 proton channel of influenza 7 and the eukaryotic voltagegated Hv1 proton channel 8,9 . Recently, Otopetrins were identified as a novel family of eukaryotic proton channels 10 . Mice have three related genes (Otop1, Otop2 and Otop3)