An efficient protocol for the facile synthesis of a series of pyrido[2,3- d]pyrimidine derivatives has been developed applying Fe3O4–ZnO–NH2–PW12O40 nanocatalyst in water. This novel method has the benefits of operational simplicity, green aspects by avoiding toxic solvents and high to excellent yields of products. Fe3O4–ZnO–NH2–PW12O40 was synthesized and characterized by Fourier transform infrared, X-ray diffraction, vibrating sample magnetometer, scanning electron microscopy, energy-dispersive X-ray spectroscopy, and transmission electron microscopy analyses. The nanocatalyst is readily isolated and recovered from the reaction mixture by an external magnet.