The selective catalytic reduction (SCR) is a technology used for reducing NO x emissions in the heavy-duty diesel (HDD) engine exhaust. In this study, the spatially resolved capillary inlet infrared spectroscopy (Spaci-IR) technique was used to study the gas concentration and NH 3 storage distributions in a SCR catalyst, and to provide data for developing a SCR model to analyze the axial gaseous concentration and axial distributions of NH 3 storage. A twosite SCR model is described for simulating the reaction mechanisms. The model equations and a calculation method was developed using the Spaci-IR measurements to determine the NH 3 storage capacity and the relationships between certain kinetic parameters of the model. A calibration approach was then applied for tuning the kinetic parameters using the spatial gaseous measurements and calculated NH 3 storage as a function of axial position instead of inlet and outlet gaseous concentrations of NO, NO 2 , and NH 3. The equations and the approach for determining the NH 3 storage capacity of the catalyst and a method of dividing the NH 3 storage capacity between the two storage sites are presented. It was determined that the kinetic parameters of the adsorption and desorption reactions have to follow certain relationships for the model to simulate the experimental data. The modeling results served as a basis for developing full model calibrations to SCR lab reactor and engine data and state estimator development as described in the references (Song et al. 2013a, b; Surenahalli et al. 2013). Keywords Aftertreatment. Selective catalytic reduction (SCR). Spaci-IR. NO x reduction. SCR model Nomenclature ɛ Void fraction of the catalyst channel [-] u Gas flow velocity [m/s] β Mass transfer coefficient [m/s] A g Geometric surface area [1/s] C Mole fraction of species [-] C g Mole fraction of species in gas phase [-] C s Concentration of species in surface phase [-] Ω NH 3 storage capacity of the catalyst [gmol/m 3 ] Ω A, NH 3 storage capacity of the first site [gmol/m 3 ] Ω B, NH 3 storage capacity of the second site [gmol/m 3 ] Ω i NH 3 storage at different temperatures [gmol/m 3 ] Θ NH 3 coverage fraction [-] R Reaction rate of the global reactions [1/s] k Reaction rate constant A Arrhenius form pre-exponential factor E Arrhenius form activation energy [kJ/gmol] T Temperature [K] η O2 The mole fraction of O 2 [-] X.