Background: Minimal change disease (MCD) is a kind of nephrotic syndrome (NS). In this study, we aimed to establish a mathematical diagnostic model based on biological parameters to classify MCD. Methods: A total of 798 NS patients were divided into MCD group and control group. The comparison of biological indicators between two groups were performed with t-tests. Logistic regression was used to establish the diagnostic model, and the diagnostic value of the model was estimated using receiver operating characteristic (ROC) analysis. Results: 13 indicators including Anti-phospholipase A2 receptor (anti-PLA2R) (P=0.000), Total protein (TP) (P=0.000), Albumin (ALB) (P=0.000), Direct bilirubin (DB) (P=0.002), Creatinine (Cr) (P=0.000), Total cholesterol (CH) (P=0.000), Lactate dehydrogenase (LDH) (P=0.007), High density lipoprotein cholesterol (HDL) (P=0.000), Low density lipoprotein cholesterol (LDL) (P=0.000), Thrombin time (TT) (P=0.000), Plasma fibrinogen (FIB) (P=0.000), Immunoglobulin A (IgA) (P=0.008) and Complement 3 (C3) (P=0.019) were significantly correlated with MCD. Furthermore, the area under ROC curves of CH, HDL, LDL, TT and FIB were more than 0.70. Logistic analysis demonstrated that CH and TT were risk factors for MCD. According to the ROC of "CH+TT", the AUC was 0.827, with the sensitivity of 83.0% and the specificity of 69.8% (P=0.000). Conclusion: The established diagnostic model with CH and TT could be used for classified diagnosis of MCD.