Variation in digit number has occurred multiple times in the history of archosaur evolution. The five digits of dinosaur limbs were reduced to three in bird forelimbs, and were further reduced in the vestigial forelimbs of the emu. Regulation of digit number has been investigated previously by examining genes involved in anterior-posterior patterning in forelimb buds among emu (
Dromaius novaehollandiae
), chicken (
Gallus gallus
) and zebra finch (
Taeniopygia guttata
). It was described that the expression of posterior genes are conserved among these three birds, whereas expression of anterior genes
Gli3
and
Alx4
varied significantly. Here we re-examined the expression pattern of
Gli3
and
Alx4
in the forelimb of emu, chicken and zebra finch. We found that
Gli3
is expressed in the anterior region, although its range varied among species, and that the expression pattern of
Alx4
in forelimb buds is broadly conserved in a stage-specific manner. We also found that the dynamic expression pattern of the BMP antagonist
Gremlin1
(
Grem1
) in limb buds, which is critical for autopodial expansion, was consistent with the digital pattern of emu, chicken and zebra finch. Furthermore, in emu, variation among individuals was observed in the width of
Grem1
expression in forelimb buds, as well as in the adult skeletal pattern. Our results support the view that the signalling system that regulates the dynamic expression of
Grem1
in the limb bud contributes substantially to variations in avian digital patterns.