SummaryHybridization in plants and animals is more common and has more complex outcomes than previously realized. Genome-wide analyses of introgression in organisms ranging from oaks to sunflowers to fruit flies show that a substantial fraction of their genomes are permeable to alleles from related species. Hybridization can lead to rapid genomic changes, including chromosomal rearrangements, genome expansion, differential gene expression, and gene silencing, some of which are mediated by transposable elements. These genomic changes may lead to beneficial new phenotypes, and selection for fertility and ecological traits may in turn alter genome structure. Dramatic increases in the availability of genomic tools will produce a new understanding of the genetic nature of species and will resolve a century-old debate over the basis of hybrid vigour, while the natural recombinants found in hybrid zones will permit genetic mapping of species differences and reproductive barriers in non-model organisms.In 1742, seven years after writing "nullae dantur species novae" (there are no new species) [1] Carolus Linnaeus was brought a fertile floral mutant of Linaria that he called "Peloria". The unusual floral structure convinced Linnaeus that the plant was of hybrid origin, and the fertility of Peloria and other hybrids led Linnaeus to abandon his earlier certainty in the fixed nature of species. Instead, he proposed the radical evolutionary hypothesis that new species could arise via hybridization [2]. Despite this illustrious pedigree, hybrid speciation had little scientific support until early in 20 th century when cytogenetic studies showed that hybridization may lead to speciation, especially if accompanied by chromosomal doubling (allopolyploidy). While these studies persuaded many 20 th century botanists that hybridization was a common and significant force in evolution, this view was often disputed by zoologists. Now, three centuries after the birth of Linneaus, hybridization is seen as an important phenomenon in many taxa, contributing to adaptation and speciation in plants, fish, and insects.The resurgent interest in hybridization is closely linked to the shift from genetic to genomic approaches. In this review, we take a genomic perspective on introgression and hybrid speciation. We limit ourselves to hybridization between sexually reproducing organisms, and so do not consider horizontal gene transfer in prokaryotes, between organelles and the nucleus, or interspecific transfers between organelles [reviewed in 3]. We focus on detecting hybrids and on the genomic and evolutionary consequences of introgression and hybrid speciation, while ignoring the effects of genome duplication. †