Organic resorcinol–formaldehyde (RF) hydrogels were introduced into a hybrid cation-exchange membrane in order to enhance its following properties: water uptake, thermal stability, and ionic conductivity. This study was aimed to investigate the modifications induced by the RF organic clusters that form a uniform distributed network within the perflourosulfonated acid (PFSA) matrix. RF concentration was controlled by resorcinol and formaldehyde impregnation time using water or ethanol solvents. The specific morphological and structural properties were characterized by atomic force microscopy, UV–Vis, and Fourier transform infrared spectroscopy. Thermo-gravimetric analysis was employed to study the thermal stability and degradation processes of the composite membranes. Proton conductivity, as a function of relative humidity (RH) at 80 °C, was measured using in-plane four-point characterization technique. Compared to the pristine membrane, the PFSA–RF hybrid membranes showed improved thermal stability at up to 46 °C and higher ionic conductivity for low RF content, especially at low relative humidity, when using ethanol-based solvents. Single fuel cell testing on RF-based membrane–electrode assembly revealed impeccable fuel crossover and power performance at 80 °C and 40% relative humidity, delivering a 76% increase in power density compared to a reference assembled with a pristine membrane and the same catalyst loadings.