Lysosomal storage disorders (LSDs) are predominantly enzyme deficiencies leading to substrate accumulation, causing progressive damage to multiple organs. To date, a crucial part of diagnosing LSDs is measuring enzymatic activity in leucocytes, plasma, or dried blood spots (DBS). Here, we present results from a proof‐of‐principle study, evaluating an innovative digital microfluidics (DMF) platform, referred to as SEEKER®, that can measure the activity of the following four lysosomal enzymes from DBS: α‐L‐iduronidase (IDUA) for mucopolysaccharidosis I (MPS I), acid α‐glucosidase (GAA) for Pompe disease, β‐glucosidase (GBA) for Gaucher disease, and α‐galactosidase A (GLA) for Fabry disease. Over 900 DBS were analysed from newborns, children, and adults. DMF successfully detected known patients with MPS I, Pompe disease, and Gaucher disease, and known males with Fabry disease. This is the first demonstration of this multiplexed DMF platform for identification of patients with LSDs in a specialised diagnostic enzyme laboratory environment. We conclude that this DMF platform is relatively simple, high‐throughput, and could be readily accommodated into a specialised laboratory as a first‐tier test for MPS I, Pompe disease, and Gaucher disease for all patients, and Fabry disease for male patients only.