The Arc two-component signal transduction system of Escherichia coli regulates the expression of numerous operons in response to respiratory growth conditions. Cellular redox state or proton motive force (⌬ H ؉) has been proposed to be the signal for the membrane-associated ArcB sensor kinase. This study provided evidence for a short ArcB periplasmic bridge that contains a His47. The dispensability of this amino acid, the only amino acid with a pK in the physiological range, renders the ⌬ H ؉ model unlikely. Furthermore, results from substituting membrane segments of ArcB with counterparts of MalF indicate that the region does not play a stereospecific role in signal reception.The Arc two-component signal transduction system of Escherichia coli regulates the expression of more than 30 operons, depending on the redox conditions of growth (20,22,30,31). The system consists of ArcB, the membrane-bound sensor kinase, and ArcA, the cognate response regulator. ArcB (17,23,27,48) (see Fig. 1A) belongs to the tripartite sensor kinase subfamily (1,16,25,35,37,44,49), is attached to the cytoplasmic membrane by two transmembrane segments (TM1 and TM2) near the N-terminal end (24), and catalyzes a phosphorelay via His292, Asp576, and His717 of ArcB to Asp54 of ArcA (14). The autophosphorylation step is stimulated by effectors, such as D-lactate, pyruvate, and acetate. These metabolites accumulate when exogenous electron acceptors limit respiration during growth (13, 18). Dephosphorylation of ArcA-P occurs by a reverse phosphorelay from the Asp54 of ArcA to the His717 and Asp576 of ArcB. The phosphoryl group is then released as P i (12).Most sensor kinases receive their signal from the periplasmic domain, resulting in conformation changes that trigger autophosphorylation. As a sensor kinase, ArcB is unusual in having a short putative periplasmic bridge (24,29). Relatively little is known about the nature of the signal for ArcB and what role the membrane-associated region plays in signal reception, except that autophosphorylation seems to be activated by excessive reducing equivalents (7,11,21,22,24,38). Two studies involving growth of cells at high pH and treatment of cells by protonophores during growth, however, led to the suggestion that ArcB kinase is activated by a decrease in proton motive force (PMF) across the cytoplasmic membrane (2, 5). Here, we confirm the transmembrane topology of ArcB by genetic analysis and probe the function of the membrane region by replacing the chromosomal arcB ϩ by a single copy of a mutant allele ( Fig. 2; Tables 1 and 2).Transmembrane topology of ArcB. To test the suggested topology based on hydrophobicity analysis, we constructed four phoA protein fusions (32) of arcB (Fig. 1B). The PhoA fusions at residues 22 and 102 of ArcB exhibited very low levels of alkaline phosphatase activity. In contrast, the PhoA fusions at residues 41 and 57 of ArcB showed very high levels of the enzyme activity (Fig. 1B). On the basis of this genetic analysis and a more recent algorithm for determining membr...