Since Vogt’s discovery of A3-retinal or 3-hydroxyretinal in insects in 1983 and Matsui’s discovery of A4-retinal or 4-hydroxyretinal in firefly squid in 1988, hydroxyretinal-protein interactions mediating vision remains largely unexplored. In the present study, A3- and A4-retinals are theoretically incorporated into squid and bovine visual pigments using the hybrid quantum mechanics/molecular mechanics (SORCI+Q//B3LYP/6-31G(d):Amber96) method and insights into the structure, enantioselectivity and spectroscopy are gathered and presented for the first time. Contrary to general perception, our findings rule out the formation of hydrogen bond between the hydroxyl-bearing β-ionone ring part of retinal and opsin. Compared to A1-pigments, A3- and A4-pigments exhibit slightly blue-shifted absorption maxima due to increase in bond-length alternation of the hydroxyretinal. We suggest that, (i) The binding site of firefly squid (Watasenia scintillians) opsin is very similar to that of the Japanese common squid (Todarodes pacificus) opsin, (ii) Molecular mechanism of spectral tuning in the small white butterflies involve sites S116, T185 and breaking of hydrogen bond between sites E180 and T185; and finally, (iii) A3-retinal may have occurred during the conversion of A1- to A2-retinal and insects may have acquired them, in order to absorb light in the blue-green wavelength region and to speed up the G-protein signaling cascade.