Understanding the stability of the seabed foundation holds paramount significance in guaranteeing the safety and structural soundness of the breakwater alongside additional offshore structures. This study aimed to investigate the stability of a sandy seabed foundation around a semi-circular breakwater under wave loading in nearshore areas. A coupled numerical model of waves, a semi-circular breakwater, and the seabed was developed based on the OpenFOAM platform. The VARANS equations were used to govern the wave behavior. Meanwhile, the Biot’s partially dynamic model was employed to numerically simulate the seabed response considering both consolidation under self-weight and dynamic response under wave loading. The effects of various wave parameters, seabed properties, and the radius of the structure on the dynamic response of the seabed and the depth of liquefaction were investigated. The numerical results indicate that an increase in wave height, period, and permeability coefficient intensifies the dynamic response of the seabed soil. Furthermore, an increase in water depth weakened the soil’s dynamic response. There was a negative correlation between the radius of the semi-circular breakwater and the dynamic response. The influence of Poisson’s ratio on the dynamic response of the seabed was relatively small. Furthermore, a stronger dynamic pore pressure response was observed at the connection between the semi-circular breakwater and the rubble foundation.