“…Therefore, in this study we sought to understand the mechanistic details of such interactions using molecular dynamics (MD) computer simulation. MD can be considered as one of the most direct approaches to elucidate the adsorption mechanism of proteins on biomaterials and to understand the atomic details that occur at the protein–adsorbent interface. , Through MD simulations, in addition to protein–surface interactions, protein adsorption mechanisms, surface-induced conformational changes, and the effect of other factors on protein adsorption can be thoroughly investigated. ,− According to the literature, some of the factors identified as affecting the adsorption of peptides or proteins on a surface include surface chemistry, pH, ionic strength, , and structural topography. , The effect of all of these parameters on the adsorption of HMGB1 to the implant surface has not been systematically investigated, or only limited work has been done. Therefore, in this study, to advance our understanding of the interactions between HMGB1 and TiO 2 implant surfaces, we performed molecular dynamics computer simulations.…”