Abstract. The paper presents methods of modeling and analysis of ionospheric parameters, which realized in the program system of complex analysis of geophysical parameters "Aurora". The methods allow to analyze of characteristic changes in the ionospheric parameters and allocate the anomalous features during periods of ionospheric disturbances. The algorithm parameters are adapted for analyzing the ionospheric data of the Paratunka station (Kamchatka) and based on results of the estimates (station data of Yakutsk, Gakona, etc. were analyzed). Methods can be applied for the mid-latitude region. The system is implemented in the public domain