The high-thrust linear motor used for the electromagnetic launch is switched by switches composed of anti-shunt thyristors. During the switching process, different current path states will appear, which will lead to changes in motor parameters and current fluctuation. Focusing on the air-core synchronous linear motor with parallel and series power supply, this paper analyzes the change in current path caused by the change in the trigger signal of anti-parallel thyristors in the process of sectionalized stator switching. The motor circuit model of the switching process is derived. A new sectionalized stators switching method is proposed to realize the smooth switching of the sectionalized stators linear motor. Finally, the correctness of the analysis and modeling is verified by simulation, and the effectiveness of the sectionalized stators switching method is tested by using the test prototype.