Since bifurcation makes it difficult to manage a paddy ecosystem, controlling bifurcation is an important management tool. In this paper, the stability and bifurcation control for a fractional order paddy ecosystem in the fallow season with time delay are investigated. Firstly, a paddy ecosystem model formulated by two-dimensional delayed fractional order differential equations with linear delayed feedback controller is proposed to reveal the interaction between weeds and inorganic fertilizers in paddy systems. Using the time delay as the bifurcation parameter, the sufficient conditions for stability of the system and the existence of Hopf bifurcation are obtained by analyzing the relevant characteristic equations. The results show that the time delay can heavily affect the dynamics of the system, and the feedback gain and the fractional order have significant impact on the control effect. Finally, the verification of the accuracy and validity of these conclusions is made by two examples, the control effect of the feedback gain and the fractional order on Hopf bifurcation are illustrated intuitively by a contour map.