2014
DOI: 10.1007/s00894-014-2450-y
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Analysis of the structure and dynamics of human serum albumin

Abstract: Human serum albumin (HSA) is a biologically relevant protein that binds a variety of drugs and other small molecules. No less than 50 structures are deposited in the RCSB Protein Data Bank (PDB). Based on these structures, we first performed a clustering analysis. Despite the diversity of ligands, only two well defined conformations are detected, with a deviation of 0.46 nm between the average structures of the two clusters, while deviations within each cluster are smaller than 0.08 nm. Those two conformations… Show more

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Cited by 54 publications
(38 citation statements)
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“…1) [8,9]. This structure is remarkable for its stability while also remaining flexible which allows the binding and transport of a wide range of molecules, both endogenous and exogenous [10]. HSA contains a free cysteine at position-34, which represents the main molecular site for thiolation, nitrosylation, and oxidation; all other cysteine residues are involved in internal disulfide bonds to stabilize the spatial conformation of the molecule [11][12][13].…”
Section: Albumin Structurementioning
confidence: 98%
“…1) [8,9]. This structure is remarkable for its stability while also remaining flexible which allows the binding and transport of a wide range of molecules, both endogenous and exogenous [10]. HSA contains a free cysteine at position-34, which represents the main molecular site for thiolation, nitrosylation, and oxidation; all other cysteine residues are involved in internal disulfide bonds to stabilize the spatial conformation of the molecule [11][12][13].…”
Section: Albumin Structurementioning
confidence: 98%
“…Therefore, it is essential to understand how this major plasma carrier protein, capable of binding ligands at different binding sites, changes its conformation and stability upon binding a particular ligand at its specific binding site. Binding of food-derived ligands such as vitamin B12 [15], fatty acids [16], lupeol [17], and phloretin [18] have also been reported to stabilize the conformation of HSA. However, there is no comprehensive study using computational and experimental methods, which demonstrates the stabilization of HSA structure by the binding of biologically active food component.…”
Section: Introductionmentioning
confidence: 99%
“…2. While our process did not design for this, the resulting candidate binding modes cover all the possible ligand positions found in crystallography for any human serum albumin-ligand complex, 56 which currently encompass 38 distinct structures deposited in the Protein Data Bank. These positions also include the possibility that ibuprofen in charged form binds in site PC up , which is experimentally confirmed as a binding location only for capric acid, thyroxine and iodipamide.…”
Section: Resultsmentioning
confidence: 99%
“…Molecular docking was used as an ancillary technique for a first screening of the protein surface, in search for binding cavities to be (potentially) occupied by ibuprofen. The positions determined included all of the binding pockets already known in crystallography for ligands bound to albumin, 56 plus a supplementary location in the lower region of the central protein cleft. The binding modes obtained were subsequently refined through MD simulations that allowed the protein to accommodate the ligand.…”
Section: Discussionmentioning
confidence: 99%