The concentration
of prostate-specific antigen (PSA) in serum is
used as an early detection method of prostate cancer (PCa); however,
it shows low sensitivity, specificity, and a poor predictive value.
Initial studies suggested the glycosylation of PSA to be a promising
marker for a more specific yet noninvasive PCa diagnosis. Recent studies
on the molecular features of PSA glycosylation (such as antenna modification
and core fucosylation) were not successful in demonstrating its potential
for an improved PCa diagnosis, probably due to the lack of analytical
sensitivity and specificity of the applied assays. In this study,
we established for the first time a high-performance PSA Glycomics
Assay (PGA), allowing differentiation of α2,6- and α2,3-sialylated
isomers, the latter one being suggested to be a hallmark of aggressive
types of cancer. After affinity purification from urine and tryptic
digestion, PSA samples were analyzed by CE-ESI-MS (capillary electrophoresis–electrospray
ionization coupled to mass spectrometry). Based on positive controls,
an average interday relative standard deviation of 14% for 41 N-glycopeptides was found. The assay was further verified
by analyzing PSA captured from patients’ urine samples. A total
of 67 N-glycopeptides were identified from the PSA
pooled from the patients. In summary, the first PGA successfully established
in this study allows an in-depth relative quantitation of PSA glycoforms
from urine. The PGA is a promising tool for the determination of potential
glycomic biomarkers for the differentiation between aggressive PCa,
indolent PCa, and benign prostate hyperplasia in larger cohort studies.