Against the background of global climate change, the warming water temperature of Antarctic surface water (<500 m) is worthy of study. Therefore, the purpose of this study was to investigate short-term variations in the water temperature of Antarctic surface water from January 2000 to December 2016, using offline coupled ocean models, i.e., the WAVEWATCH-III (WW3) model and the Stony Brook Parallel Ocean Model (sbPOM). The validation of the WW3-simulated significant wave height (SWH) against the measurements from the Jason-2 altimeter produced a root mean square error (RMSE) of 0.39 m with a 0.30-m bias. Moreover, the sbPOM-simulated water temperatures were compared with the collocated measurements from Argo buoys, yielding, and RMSE for water temperatures of less than 1.0 °C and a correlation coefficient (COR) of 0.92. The annual variation in the sbPOM-simulated water temperatures of the Antarctic surface water layer showed that the sea surface temperatures (SSTs) of the Pacific Ocean and Atlantic Ocean were greater than the SST of the Indian Ocean. Moreover, the SST rapidly increased to 2°C in the Pacific Ocean in specific years due to El Nino and La Nina events. The vertical profile of the water temperature showed that the depth of the cool water in the Indian Ocean has decreased to 100 m since 2008, while the depth in the Pacific Ocean and Atlantic Ocean is about 200 m. It was also found that the seasonal variations in the water temperature at depths of 0 m, 50 m, and 100 m in the Pacific Ocean were more sensitive to El Nino events between January and June. However, it was revealed in this work that the increasing intensity of El Nino and La Nina events could reduce water warming in the Pacific Ocean.