The perfobond (PBL) shear connector reinforced with transverse rebar effectively contributes to sufficient ductility, bearing capacity, and anti‐fatigue behavior to hybrid structures. The construction practice involves the placement of the transverse rebar at the bottom position within the concrete dowel, whereas past studies employed transverse rebar in the center of the dowel; hence, there exists a gap between literature and design practices. Furthermore, there is no specific information in the design guidelines for hybrid structures on the influence of the position of the transverse rebar. Therefore, the current research deals with the analytical investigations employing the coupled Rigid Body Spring Model (RBSM) and the nonlinear solid Finite Element Method (FEM) that encompass the internal fracture behavior of concrete with the various parameters of transverse rebar, particularly the position and strength, to recognize the failure mechanism. It was determined that the numerical model accurately captured the test shear capacity and failure modes. The internal failure process of a specimen with transverse rebar at the bottom position, identical to actual field practice, revealed that as the height of the concrete region above the rebar rises, more compressive stresses in a trapezoidal manner are being generated, leading to an enhancement of the deformation capacity. Furthermore, it was confirmed that the specimen with the transverse rebar inserted at the bottom generates the greatest axial force, which is followed by the greatest shear capacity.