Reducing
the dimensions of electronic devices to the nanoscale
is an important objective with significant scientific and technical
challenges. In molecule-based approaches, the orientation of the molecule
and coordination to electrodes (denticity) can dramatically affect
the electrical properties of the junction. Typically, higher conductance
is associated with shorter transport distances and stronger molecule–electrode
coupling; however, this is not always the case, as highlighted in
this study. We focused on 7,7,8,8-tetracyanoquinodimethane (TCNQ)
and 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane (F4TCNQ) molecules and have used the scanning tunneling microscopy break
junction (STM-BJ) method to measure the electrical conductance of
single molecules bridged between gold electrodes with different molecular
orientations and with varying denticities. In conjunction with the
experiments, density functional theory (DFT) and nonequilibrium Green’s
function (NEGF) calculations were performed to determine the conductance
of four distinct molecular configurations. The calculated conductances
show how different configurations and denticities influence the molecular
orbital offsets with respect to the Fermi level and provide assignments
for the experimental results. Surprisingly, lower denticity results
in higher conductance, with the highest predicted molecular conductance
being 0.6 G0, which is explained by the influence of molecule–electrode
coupling on the energy of molecular orbitals relative to the Fermi
level. These results highlight the importance of molecular geometry
and binding configuration of the molecule to the electrode. Consequently,
our findings have profound ramifications for applications in which
orbital alignment is critical to the efficiency of charge transport,
such as in dye sensitized solar cells, molecular switches, and sensors.