The social history of Indonesia has recorded many types of conflict with serious impacts. The character of conflict in Indonesia has gradually changed. This study aims to elaborate the trends and patterns of the conflict changes in Indonesia, mapping the basic issues of the conflict, and offering the ideas of deconstruction to the discourse of plurality on ethnicity, religion, race, and inter-groups that tend to be seen as the causes of conflict. This study shows that the changing of violent conflict's character in Indonesia is strongly influenced by the developments of a regime's socio-economic and political climate dynamics. Under this reason, to understand the phenomenon of conflict in Indonesia cannot be strictly based on the plurality of ethnicity, religion, race, and inter-group issues, although the experiences of communal conflicts that have occurred have shown the ideological articulations that legitimize the use of violence related to ethnicity, class, and religious affiliation. Through the deconstructive approach, this study negates that the root of violent conflict comes from the character of local communality. On the contrary, the plurality of ethnicity, religion, and race should be seen as the social capital that worthwhile as the local mechanisms in resolving the various conflicts and as a means of empowerment.