The continuing emergence of variants of the SARS-CoV-2 virus requires the development
of modular molecular therapies. Here, we engineered a recombinant amphiphilic protein,
oleosin, to spontaneously self-assemble into multivalent micellar nanostructures which
can block the Spike S1 protein of SARS-CoV-2 pseudoviruses (PVs). Short recombinant
proteins like oleosin can be formulated more easily than antibodies and can be
functionalized with precision through genetic engineering. We cloned S1-binding
mini-protein genes called LCB
x,
previously designed by David
Baker’s laboratory (UW Seattle), to the N-terminus of oleosin, expressing
Oleo-LCB
x
proteins in
E. coli
. These proteins
largely formed 10–100 nm micelles as verified by dynamic light scattering. Two
proteins, Oleo-LCB1 and Oleo-LCB3, were seen to completely and irreversibly block
transduction by both wild-type and delta variant PVs into 293T-hsACE2 cells at 10
μM. Presented in multivalent micelles, these proteins reduced transduction by PVs
down to a functional protein concentration of 5 nM. Additionally, Oleo-LCB1 micelles
outperformed corresponding synthetic LCB1 mini-proteins in reducing transduction by PVs.
Tunable aqueous solubility of recombinant oleosin allowed incorporation of
peptides/mini-proteins at high concentrations within micelles, thus enhancing drug
loading. To validate the potential multifunctionality of the micelles, we showed that
certain combinations of Oleo-LCB1 and Oleo-LCB3 performed much better than the
individual proteins at the same concentration. These micelles, which we showed to be
non-toxic to human cells, are thus a promising step toward the design of modular,
multifunctional therapeutics that could bind to and inactivate multiple receptors and
proteins necessary for the infection of the SARS-CoV-2 virus.