The epidermal mucus of fish species has been found to contain antimicrobial proteins and peptides, which is of interest in regard to fish immunity. An acidic extract from the epidermal mucus of the Atlantic cod (Gadus morhua) was found to exhibit antimicrobial activity against Bacillus megaterium, Escherichia coli and Candida albicans. This activity varied significantly when salt was added to the antimicrobial assay, and was eliminated by pepsin digestion. No lysozyme activity was detected in the extract. By using weak cationic exchange chromatography together with reversedâphase chromatography, and monitoring the antimicrobial activity, we have isolated four cationic proteins from the mucus extract. Using Nâterminal and Câterminal amino acid sequence analysis, together with MS, the antimicrobial proteins were identified as histone H2B (13â565âDa), ribosomal protein L40 (6397âDa), ribosomal protein L36A (12â340âDa) and ribosomal protein L35 (14â215âDa). The broad spectra of antimicrobial activities in the cod mucus and the characterization of four antimicrobial polypeptides suggest that mucus compounds contribute to the innate host defence of cod.