Abstract. In a recent randomized controlled trial, the use of protease inhibitor (PI)-based antiretroviral therapy (ART) was associated with a significantly lower incidence of malaria compared with non-nucleoside reverse transcriptase inhibitor-based ART in a cohort of human immunodeficiency virus-infected Ugandan children living in an area of high malaria transmission intensity. In this report, we compared the prevalence of asymptomatic parasitemia and gametocytemia using data from the same cohort. The prevalence of asymptomatic parasitemia did not differ between the two ART treatment arms. The PI-based arm was associated with a lower risk of gametocytemia at the time of diagnosis of malaria (6.6% versus 14.5%, P = 0.03) and during the 28 days after malaria diagnosis (3.4% versus 6.5%, P = 0.04). Thus, in addition to decreasing the incidence of malaria, the use of PI-based ART may lower transmission, as a result of a decrease in gametocytemia, in areas of high malaria transmission intensity.The effects of human immunodeficiency virus (HIV) on malaria have been well documented and include increased malaria incidence, increased parasitemia, and worse clinical outcomes.1-3 Antiretroviral treatment (ART) for HIV that is also effective in preventing malaria and reducing transmission would have important public health implications for HIVinfected patients living in areas where malaria is highly endemic, such as sub-Saharan Africa. The HIV protease inhibitors (PIs) have been shown to inhibit the growth of Plasmodium falciparum, the most common cause of malaria in Africa, in culture and in animal models. [4][5][6][7] In addition to activity against the asexual stage of the parasite, PIs have shown in vitro activity against gametoctyes, the sexual stage of the parasite responsible for transmission to mosquitoes. 8 However, there are limited clinical data on the effects of PIs on asymptomatic parasitemia and gametocytemia.We recently published the results of an open-label randomized trial comparing PI-based versus non-nucleoside reverse transcriptase inhibitor (NNRTI)-based ART for the prevention of malaria among HIV-infected children living in Tororo, a highly malaria-endemic area of Eastern Uganda. 9 In this study the use of PI-based ART was associated with a 41% reduction in the incidence of malaria, largely attributable to ART-antimalarial drug interactions resulting in a significant reduction in the risk of recurrent malaria after treatment with artemether-lumefantrine (AL). In this report, we compare the prevalence of asymptomatic parasitemia and gametocytemia between ART treatment arms in this trial. Briefly, study participants were HIV-infected children 2 months to 5 years of age who were either eligible for ART initiation or already receiving first-line ART with virologic suppression. Participants were randomized to receive either an NNRTI-(nevirapine or efavirenz)-based or PI-(ritonavir-boosted lopinavir)-based regimen. Participants also received an insecticide-treated bed net at enrollment and daily trimethopr...