e Sterile alpha motif-and histidine/aspartic acid domain-containing protein 1 (SAMHD1) limits HIV-1 replication by hydrolyzing deoxynucleoside triphosphates (dNTPs) necessary for reverse transcription. Nucleoside reverse transcriptase inhibitors (NRTIs) are components of anti-HIV therapies. We report here that SAMHD1 cleaves NRTI triphosphates (TPs) at significantly lower rates than dNTPs and that SAMHD1 depletion from monocytic cells affects the susceptibility of HIV-1 infections to NRTIs in complex ways that depend not only on the relative changes in dNTP and NRTI-TP concentrations but also on the NRTI activation pathways.
Human immunodeficiency virus type 1 (HIV-1) replicates primarily in activated CD4 ϩ T cells, while showing poor reproductive capacity in monocytes, macrophages, dendritic cells, and resting CD4 ϩ T cells (1-10). Sterile alpha motif-and histidine/ aspartic acid domain-containing protein 1 (SAMHD1) is responsible for blocking HIV-1 replication in such cells (5,(11)(12)(13), reportedly by acting as a dGTP-stimulated deoxynucleotide triphosphohydrolase that hydrolyzes deoxynucleoside triphosphates (dNTPs), thus decreasing the amounts of dNTPs available for reverse transcription (3,4,(14)(15)(16)(17)(18)(19).Nucleoside reverse transcriptase inhibitors (NRTIs) are nucleoside analogs and key components of antiretroviral therapies (20-26). They generally lack a 3=-OH group and thus act as chain terminators upon incorporation into viral DNA by reverse transcriptase (RT) (26-29). However, 4=-ethynyl-2-fluoro-2=-deoxyadenosine (EFdA) retains a 3=-OH group, acts primarily by blocking RT translocation following incorporation of EFdA monophosphate (MP) into the template-primer, and has picomolar antiviral potency (30-37). NRTIs are administered as nucleosides and are phosphorylated to their active forms by cellular kinases (38). Hence, they compete with dNTPs for activation by cellular kinases, and their incorporation by RT is influenced by the cellular concentrations of dNTPs, which compete with NRTI triphosphates (TPs) at the RT active site (39,40). Amie et al. (19) recently reported that SAMHD1 does not significantly hydrolyze dideoxynucleoside triphosphates (ddNTPs) or zidovudine (AZT)-TP and that depletion of SAMHD1 in monocytic THP-1 cells decreased the potency of these NRTIs in a pseudotype-based assay. Strong evidence that the decreased potency of these NRTIs was due to increased amounts of competing dNTPs was presented. Our parallel independent study confirmed their data, extended the number of NRTIs studied, validated the results with fully infectious HIV-1, and found an unexpected disparity in the effects of SAMHD1 on the deoxyribosylthymine (dT) analogs AZT and stavudine (d4T). We demonstrate that this is due to differences in the activation of AZT and d4T, highlighting the importance of distinct metabolic pathways in NRTI activation, in addition to competition with dNTPs.We tested purified Escherichia coli-produced recombinant SAMHD1 for dGTP-regulated NRTI-TP hydrolysis (using dNTPs as a re...