33Sequential proteolysis of the amyloid precursor protein (APP) and amyloid-β peptide (Aβ) release 34is an upstream event in Alzheimer's disease (AD) pathogenesis. The function of APP in neuronal 35 physiology is still, however, poorly understood. Along with its paralog APP-like Proteins 1 and 2 36 (APLP1-2), APP is involved in neurite formation and synaptic function by mechanisms that are 37 not elucidated. APP is a single-pass transmembrane protein expressed at high levels in the brain 38 that resembles a cell adhesion molecule or a membrane receptor, suggesting that its function relies 39 on cell interaction processes and/or activation of intracellular pathways of signal transduction. 40Along this line, the APP intracellular domain (AICD) was reported to act as a transcriptional factor 41 for targeted gene activation that mediates physiological APP functions. Here, we used an unbiased 42 transcriptome-based approach to identify the genes transcriptionally regulated by APP in the rodent 43 embryonic cortex and upon maturation of primary cortical neurons. The transcriptome analysis did 44 not detect any significant differences in expression of previously proposed AICD target genes. The 45 overall transcriptional changes were subtle, but we found that genes clustered in neuronal-activity 46 dependent pathways are dysregulated in the absence of APP. Among these genes, we found the 47 activity-dependent Neuronal PAS domain protein 4 (NPAS4) Immediate Early Gene to be 48 downregulated in the absence of APP. Down-regulation of NPAS4 in APP knock-out (KO) neurons 49is not related to AICD but to the APP ectodomain. We studied the effect of APP deficiency on 50GABAergic and glutamatergic transmission, and found an increased production of the inhibitory 51 neurotransmitter GABA in APP KO neurons, along with a reduced expression of the GABA (A) 52 receptors alpha1, suggesting an impaired GABAergic neurotransmission in the absence of APP. 53 CRISPR-Cas-mediated silencing of NPAS4 in neurons led to similar observations. Altogether, our 54 results point out a new role for APP in the regulation of excitatory/inhibitory neurotransmission 55 through the regulation of the activity-dependent NPAS4 gene. 56 4 excitation onto the same neurons (Spiegel et al., 2014). NPAS4 is therefore a key player in the 96 maintenance of excitatory/inhibitory balance in neuronal network. 97The precise mechanisms underlying APP synaptic functions are still elusive. One could suspect 98 APP to regulate the expression of genes involved in synaptic activity, or to shape the structure of 99 the synapse. APP was shown to control gene expression through its intracellular domain called 100AICD. An increasing list of AICD candidate genes has emerged from various models (reviewed in 101Pardossi-Piquard and Checler, 2012). Some of these candidate genes failed to be confirmed by 102 transcription analysis in APP-deficient cell lines (Hebert et al., 2006; Waldron et al., 2008), and 103 APP was also reported to regulate gene transcription independently of AICD...