For the multi-dimensional simulation of the engines with advanced compression-ignition combustion strategies, a practical and robust chemical kinetic mechanism is highly demanded. Decoupling methodology is effective for the construction of skeletal mechanisms for long-chain alkanes. To improve the performance of the decoupling methodology, further improvements are introduced based on recent theoretical and experimental works. The improvements include (1) updating the H 2 /O 2 sub-mechanism; (2) refining the rate constants in the HCO/CH 3 /CH 2 O sub-mechanism; (3) building a new reduced C 2 sub-mechanism; and (4) improving the large-molecule sub-mechanism. With the improved decoupling methodology, a skeletal primary reference fuel (PRF) mechanism is developed. The mechanism is validated against the experimental data in shock tubes, jet-stirred reactors, and premixed and counterflow flames for various PRF fuels covering the temperature range of 500-1450 K, the pressure range of 0.1-5.5 MPa, and the equivalence ratio range of 0.25-1.0. Finally, the skeletal mechanism is coupled with a multi-dimensional computational fluid dynamics model to simulate the combustion and emission characteristics of homogeneous charge compression ignition (HCCI) engines fueled with iso-octane and PRF. Overall, the agreements between the experiment and prediction are satisfactory.