Chatter in thin-walled parts is easy to occur in the process of machining, so the analysis of the stability of thin-walled parts has always been a research hotspot. In this paper, considering the influence of cutter eccentricity on milling force first, the coefficients of milling force were able to be identified by combining the milling force model with genetic algorithm. The results show that this method can obtain the milling force coefficients only by one experiment, and the accuracy is higher. Then the tool point Frequency Response Function (FRF) for a given combination can be calculated by using the Receptance coupling substructure analysis (RCSA) method that uses Timoshenko beam theory. Finally, the milling system can be divided into three types by aspect ratio. That is, when aspect ratio is less than 0.03, the system is considered to be a rigid tool-flexible workpiece system, but aspect ratio is between 0.03 and 0.2, the system is considered to be a flexible tool-flexible system, then aspect ratio is greater than 0.2, the system is considered to be a flexible cutter-rigid workpiece system.