Scrapie is a neurodegenerative disease of slow and lethal progression affecting sheep, goats and mouflons, which is part of a group of pathologies produced by prions or transmissible spongiform diseases (TSEs), these affect both humans and animals. Based on the fact that immunohistochemistry (IHC) is the internationally recognized method for the diagnosis of classical scrapie in goats, a species considered as a reservoir for the disease that may be zoonotic, we aimed to detect and differentiate it from other lesions or pathologies of the central nervous system. Chile in relation to bovine spongiform encephalopathy (BSE), is classified as a disease-free country. Scrapie is actively monitored for the sheep, but passively for the caprine species, which is why this study was carried out in slaughtered goats in the central north of the country (IV Region), to provide information to the surveillance system for this disease. Fifty brains of goats older than 2 years were used, regardless of race or gender. The obex was taken from each of them, two serial histological sections were obtained, one used for the staining of Hematoxylin and Eosin (H/E) (50 cuts), which allowed us to observe lesions and to evaluate the aptitude of the samples. The other one was used for immunohistochemistry (IHC) (50 cuts), which allows to locate prions in situ, using a commercial kit and the technique described by Manning et al. [1]. For a correct diagnosis, 4 controls were used, 2 positive (1 ovine and 1 caprine) and 2 negative (1 ovine and 1 caprine), provided by an International Reference Center. Analysis of the 50 H/E histological sections indicated that all were eligible for the IHC technique, and non-specific lesions (38/50) were found, such as focal haemorrhage, perivascular infiltrate and pigments, all of which are not attributable to prions. With the IHC technique, all the homologous histological sections of the samples and the negative controls were classified as negative to classic scrapie, due to the fact that they did not present immunostaining characterized by a red granular precipitate, which was present in the positive controls used. The results obtained in this work validate the application of the IHC technique at the level of obex, as a method of diagnosis of classic goat scrapie in the country.