In conjugate symmetric data transmission, due to insufficient judgment of congestion during transmission, the amount of data is large and the transmission rate is low. In order to improve the data transmission rate, a conjugate symmetric data transmission control method based on machine learning is designed. Firstly, the data to be transmitted is tracked and determined, and then conjugate symmetric data fusion is completed according to the calculation result of the best tracking signal. According to the fusion results, the framework of the conjugate symmetric data coding system is established, and the data coding is completed. The average congestion mark value is calculated by the machine learning method, and the congestion judgment of data transmission is completed. On the basis of congestion determination, the efficient transmission control of conjugate symmetric data is realized by specifying the conjugate symmetric data transmission protocol. Experimental results show that compared with traditional control methods, this control method has the advantages of a high delivery rate, low message transmission overhead and low data transmission delay. Compared to the traditional two-way path model, the scheduling method proposed in this study increases the transmission delivery rate by 5%, while reducing the transmission cost and delay by 0.7 cost index and 1.1 min delay, respectively. In comparison with the performance of accurate error tracking equalization, the transmission delivery rate of the research method increased by 21%, and in transmission cost index and delay analysis, it also decreased by 3.1 and 2.9 minutes. Based on the above performance comparison analysis, it can be concluded that the machine learning method has more superior transmission control performance.