Through unfamiliar and at times marginal environments, successful colonisation of the Pacific Islands relied upon the introduction of domesticated flora and fauna as well as widespread burning to reduce forests and lowland vegetation for agricultural production. These transformations led to the extinction of avifauna, the reduction of forests, and extensive slope erosion and sedimentation into valleys and along shorelines. To date, most attention has been paid to human-induced changes to the terrestrial landscape. In this paper we present the archaeomalacological results from the deeply stratified coastal Kawela Mound, one of the oldest habitation sites in the Hawaiian Islands, with occupation beginning during the 12th century AD. We describe how anthropogenic change of the terrestrial landscape caused sediment run-off, increased shoreline turbidity, and progradation of the adjacent shoreline altering marine habitats, which is recorded in the diversity, size, and habitat preference of food shellfish harvested over nearly eight centuries. The construction of ancient stone-walled fishponds along the littoral shore provided an artificial rocky habitat for shellfish otherwise uncommon along the sandy coast. Consequently, AMS dated layers containing these shellfish provide an indirect avenue for determining the chronology of stone-walled fishponds, the construction of which was directed under the aegis of elites and thus one of the hallmarks of increasing social complexity during the last two centuries before Contact in the late 18th century.