The construction
and engineering of artificial enzymes consisting
of abiological catalytic moieties incorporated into protein scaffolds
is a promising strategy to realize non-natural mechanisms in biocatalysis.
Here, we show that incorporation of the noncanonical amino acid para-aminophenylalanine
(pAF) into the nonenzymatic protein scaffold LmrR creates a proficient
and stereoselective artificial enzyme (LmrR_pAF) for the vinylogous
Friedel–Crafts alkylation between α,β-unsaturated
aldehydes and indoles. pAF acts as a catalytic residue, activating
enal substrates toward conjugate addition via the formation of intermediate
iminium ion species, while the protein scaffold provides rate acceleration
and stereoinduction. Improved LmrR_pAF variants were identified by
low-throughput directed evolution advised by alanine-scanning to obtain
a triple mutant that provided higher yields and enantioselectivities
for a range of aliphatic enals and substituted indoles. Analysis of
Michaelis–Menten kinetics of LmrR_pAF and evolved mutants reveals
that different activities emerge via evolutionary pathways that diverge
from one another and specialize catalytic reactivity. Translating
this iminium-based catalytic mechanism into an enzymatic context will
enable many more biocatalytic transformations inspired by organocatalysis.