Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment

Roh, Seong Woon; Sung, Youlboong; Nam, Young-Do; Chang, Ho-Won; Kim, Kyoung-Ho; Yoon, Jung‐Hoon; Jeon, Che Ok; Oh, Hee‐Mock; Bae, Jin‐Woo

doi:10.1007/s12275-007-0239-8

Cited by 84 publications

(55 citation statements)

References 30 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…At the time of writing, the genus Arthrobacter comprised 87 recognized species. Although most Arthrobacter species have been isolated from sediments (Chen et al, 2005;Pindi et al, 2010;Roh et al, 2008) or soils (Ganzert et al, 2011;Park et al, 2014;Zhang et al, 2010), several…”

mentioning

confidence: 99%

Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina

Lee

Hyun

Kim

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

A novel strain, designated AM23 T , was isolated from the gut of a purple sea urchin Heliocidaris crassispina collected from the coastal waters of the Korean island Dokdo. 16S rRNA gene sequence analysis showed that strain AM23 T belonged to the genus Arthrobacter in the family Micrococcaceae and shared highest sequence similarity with Arthrobacter agilis DSM 20550 T (98.77 %). Strain AM23 T was catalase-positive, oxidase-negative and grew optimally at 20 8C, in the presence of 1 % (w/v) NaCl and at pH 7. The isolate was a Gram-stain-positive, non-motile, strictly aerobic and coccus-shaped bacterium. The major cellular fatty acids were anteiso-C 15 : 0 and iso-C 15 : 0 . The polar lipids of strain AM23 T were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, one unidentified glycolipid and four unidentified lipids. The components of the cell-wall peptidoglycan were lysine, glutamic acid and alanine and the predominant cell-wall sugars were galactose, mannose, rhamnose and ribose. The major respiratory quinone was identified as menaquinone MK-9(H 2 ). The genomic DNA G+C content was 67.3 mol% and the DNA-DNA hybridization values showed the strain shared less than 29 % genomic relatedness with A. agilis DSM 20550 T . The results of the phylogenetic, phenotypic and genotypic analysis indicate that strain AM23 T represents a novel species in the genus Arthrobacter, for which the name Arthrobacter echini sp. nov. is proposed. The type strain is AM23 T (5KACC 18260 T 5DSM 29493 T ).

show abstract

mentioning

confidence: 99%

Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina

Lee

Hyun

Kim

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

show abstract

“…Two reference strains, G. mitskevichiae KACC 15410 T and G. hiemivivida CIP 108528 T , were obtained from the Korean Agricultural Culture Collection (KACC; Suwon) and Centre de Ressources Biologiques de l'Institut Pasteur (CRBIP; Paris), respectively, and used for comparative purposes. Biotechnology), and 16S rRNA gene sequencing was conducted as described previously (Roh et al, 2008). SeqMan software (DNASTAR) was used to assemble the nearly full-length 16S rRNA gene sequence (1441 bp).…”

mentioning

confidence: 99%

Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia

Roh

Lee

et al. 2013

International Journal of Systematic and Evolutionary Microbiology

Self Cite

View full text Add to dashboard Cite

Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia A Gram-staining-negative, strictly aerobic, rod-shaped bacterium, designated CBA3202 T , was isolated from seashore sand on Jeju Island, Republic of Korea. Based on the 16S rRNA gene sequence analysis, strain CBA3202 T was allocated to the genus Gillisia (family Flavobacteriaceae) and was most closely related to the type strain of Gillisia mitskevichiae (99.0 % 16S rRNA gene sequence similarity). Optimal growth occurred at 25 6C and with 3 % NaCl. The only isoprenoid quinone was menaquinone-6 (MK-6), the predominant fatty acids were C 16 : 0 , iso-C 15 : 1 G, iso-C 16 : 0 and summed feature 3 (comprising C 16 : 1 v6c and/or C 16 : 1 v7c), and the DNA G+C content was 34.9 mol%. The polar lipids were phosphatidylethanolamine, two unidentified aminolipids and several unidentified polar lipids. Based on phylogenetic inference and phenotypic data, we conclude that strain CBA3202 T represents a novel species of the genus Gillisia, for which the name Gillisia marina sp. nov. is proposed. The type strain is CBA3202 T

show abstract

“…Bootstrap analysis was performed based on 1000 replications (Felsenstein, 1985). DNA-DNA relatedness was determined using photobiotin-labelled DNA probes and microwell plates as described previously (Roh et al, 2008).…”

mentioning

confidence: 99%

Nitratireductor basaltis sp. nov., isolated from black beach sand

Kim

Roh

Chang

et al. 2009

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

View full text Add to dashboard Cite

A Gram-negative, coccoid-or rod-shaped bacterium was isolated from black sand collected from Soesoggak beach, Jeju Island, Korea. The isolate, designated J3 T , grew at 15-45 6C, at pH 5.5-10.0 and in 0-8 % NaCl. It was oxidase-and catalase-positive. Strain J3 T reduced nitrate to nitrite, but did not reduce nitrite to nitrogen gas. Phylogenetic analysis of the 16S rRNA gene sequence showed that strain J3 T was closely related to Nitratireductor aquibiodomus NL21 T and belonged to the genus Nitratireductor. Major cellular fatty acids were C 18 : 1 v7c (82.0 %), C 19 : 0 v8c cyclo (4.3 %) and C 18 : 0 (4.0 %), a profile that is typical of members of the genus Nitratireductor and distinct from those of other genera in the family Phyllobacteriaceae. Differences in physiological characteristics and fatty acid profiles, as well as low DNA-DNA hybridization values, further established that strain J3 T was distinct from N. aquibiodomus NL21 T . Thus, strain J3 T (5KCTC 22119 T 5JCM 14935 T ) should be classified as the type strain of a novel species in the genus Nitratireductor, for which the name Nitratireductor basaltis sp. nov. is proposed.

show abstract

Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment

Cited by 84 publications

References 30 publications

Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina

Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina

Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia

Nitratireductor basaltis sp. nov., isolated from black beach sand

Contact Info

Product

Resources

About