Palo Laziale Wood is a relatively small biotope (129 ha) situated along the coast of the Metropolitan Area of Rome, Lazio region, Italy. Despite being one of the region's remaining patches of an ancient oak floodplain broad-leaved forest, it conserves numerous priority habitats and species of high conservation interest. The vegetation consists mainly of Turkey oak stands with small temporary ponds and flooded meadows. The forest underwent a dieback in 2003, triggered by a significantly hot and dry summer. In 2018, an ecological restoration project (LIFE PRIMED LIFE17 NAT/GR/000511) was initiated to restore Palo Laziale’s ecosystems. This paper presents the methodological approach employed to assess the vegetation ecology of a degraded forest ecosystem. Such an investigation was a key component of the Adaptative Restoration Plan of the Project. It provided the baseline necessary for designing and calibrating the planned direct conservation actions on the target habitat types (91M0: Pannonian-Balkanic turkey oak-sessile oak forests, 3170*: Mediterranean temporary ponds, 5230*: Arborescent matorral with Laurus nobilis, etc.) and establishing reference values to enable long-term monitoring. Plant taxa comparison from 1 ha square-grid sampling and multivariate analyses were carried out to group species and identify environmental and Ellenberg-based drivers. Six ecologically distinct units were found, eventually confirming the distinctive ecological heterogeneity of Mediterranean ecosystems. Amongst these, the hygrophilous vegetation has resulted to be the one mainly affected by the dieback outbreak. Due to the high heterogeneity, introduced by the massive tree mortality, the method of regular 1 ha squares turned out to be a reliable alternative to random vegetation sampling plots (e.g., phytosociological relevés) to disentangle ecological patterns of fragmented and disturbed habitats.