In ensemble weather forecast, tropical cyclone (TC) tracks sometimes group together into trajectories parting away from each other. The goal of this study is to propose an objective method, based on a robust clustering approach, to detect such separation scenarios in the Japan Meteorological Agency Meso‐scale Ensemble Prediction System (MEPS) for three TCs: “Dolphin” (2020), “Nepartak” (2021), and “Meari” (2022). Taking advantage of the independence of the density‐based spatial clustering of applications with noise algorithm to the prior choice of the number of clusters, we first describe an objective way to calculate the aggregation distance, by searching the most frequent Euclidean distance between all the tracks. The clustering is then applied to the forecasted tracks, for each initialization time of MEPS (every 6 hr). Separation scenarios exist when the number of clusters is greater than one.