X-ray microscopy instruments have the unique ability to achieve nondestructive imaging with higher spatial resolutions than traditional X-ray computed tomography (CT) systems. This unique ability is of interest to industrial quality control entities, as they deal with small features in precision manufactured parts. Since many of today’s technology and manufacturing companies demand increasingly higher levels of precision, accuracy, and reliability for dimensional measurements on feature sizes that are much smaller than 5mm, it would be ideal to further expand the imaging capabilities of X-ray microscopy to the field of precision metrology. To address such demand, this paper describes the development of a measurement workflow, through a package consisting of hardware and software, to improve the accuracy of dimensional data obtained with 3D X-ray microscopes (XRM). The workflow, called Metrology Extension (MTX), was designed to adjust and configure the XRM instrument work-zone to perform dimensional measurements. The main adjustments of an XRM instrument through MTX workflow, which must be implemented before scanning parts of interest for dimensional evaluation, include applying a distortion map correction on the image projections produced by the X-ray detector and a voxel scale correction prior to data reconstruction. The main purpose of this article is to present, evaluate, and analyze the experimental results of various measurement tests to verify the metrological performance of several XRM systems operating with the MTX workflow. The main results show that these systems can produce repeatable and reproducible measurements, with repeatability standard deviations of the order of 0.1μm, reproducibility standard deviations of less than 0.5μm, and measurement accuracies comparable to those offered by high-precision tactile coordinate measurement machines (with deviations within the range of ±0.95µm). Therefore, once the MTX workflow is executed, XRM instruments can be used to measure small volumes, in the order of (5mm)3 or less, with improved dimensional accuracy.