Quality assessment is a cornerstone of fruit production and distribution, particularly regarding storage conditions and duration. Citrus fruits, a staple in global consumption patterns, serve as aultimate example. This study employs a non-destructive analytical technique, X-ray Computed Tomography (CT) scanning to meticulously analyze a substantial sample of 300 citrus fruits, specifically satsuma, subjected to both ambient (20-22°C, 50-60% humidity) and refrigeration conditions (6-8°C, 65-75% humidity). Through a methodologically rigorous approach, we conduct Stratified Dataset Splitting, allocating 60% of the X-ray datasets for training, with 20% dedicated to validation and testing, respectively. Our research introduces a pioneering methodology termed Feature Enhancement Vision Transformers (FEViT), meticulously designed to augment precision in 1 citrus fruit classification via X-ray image analysis. By leveraging the transforma-tive potential of Vision Transformer architecture, FEViT integrates convolutional layers and expanded input dimensions to enhance classification performance substantially. Our empirical findings unequivocally demonstrate the superior efficacy of FEViT models vis-à-vis conventional ViT counterparts across diverse datasets. Particularly noteworthy are the marked performance gains exhibited by FEViT-Large variants, evidenced by notable increases in precision (5.08%), accuracy (5.47%), recall (4.55%), and F1 scores (5.28%). This underscores the distinguish-able enhanced discriminatory prowess of FEViT models. Extensive validation through rigorous experimentation ratifies FEViT’s supremacy over traditional deep learning architectures, affirming heightened accuracy, precision, recall, and F1 scores. Our study heralds the advent of FEViT architecture as a milepost in citrus fruit image classification, promising augmented accuracy and robustness vis-à-vis extant methodologies. This research holds profound implications for the agricultural sector, especially in domains such as citrus and broader fruit classification , where nuanced image analysis is indispensable for quality assessment and informed decision-making.