IntroductionThalassemia represents a significant public health challenge globally. However, the global burden of thalassemia and the disparities associated with it remain poorly understood. Our study aims to uncover the long‐term spatial and temporal trends in thalassemia at global, regional, and national levels, analyze the impacts of age, time periods, and birth cohorts, and pinpoint the global disparities in thalassemia burden.MethodsWe extracted data on the thalassemia burden from the Global Burden of Disease Study (GBD) 2019. We employed a joinpoint regression model to assess temporal trends in thalassemia burden and an age‐period‐cohort model to evaluate the effects of age, period, and cohort on thalassemia mortality.ResultsFrom 1990 to 2019, the number of thalassemia incident cases, prevalent cases, mortality cases, and disability‐adjusted life years (DALYs) decreased by 20.9%, 3.1%, 38.6%, and 43.1%, respectively. Age‐standardized rates of incidence, prevalence, mortality, and DALY declined across regions with high, high‐middle, middle, and low‐middle sociodemographic index (SDI), yet remained the highest in regions with low SDI and low‐middle SDI as well as in Southeast Asia, peaking among children under five years of age. The global prevalence rate was higher in males than in females. The global mortality rate showed a consistent decrease with increasing age.ConclusionThe global burden of thalassemia has significantly declined, yet notable disparities exist in terms of gender, age groups, periods, birth cohorts, SDI regions, and GBD regions. Systemic interventions that include early screening, genetic counseling, premarital health examinations, and prenatal diagnosis should be prioritized in regions with low, and low‐middle SDI, particularly in Southeast Asia. Future population‐based studies should focus specifically on thalassemia subtypes and transfusion requirements, and national registries should enhance data capture through newborn screening.