A study was conducted to determine the physicochemical parameters of surface water and heavy metal concentrations in the mudskipper (Periophthalmus papilio) fish, sediments, and water collected from the Ikpukulu, Kalio, and Ogoloma swamps of Okrika Local Government Area, Rivers State, Nigeria and analysed using standard methods. All samples were collected for six months from three stations in 2023. The results indicate that pH and temperature values were significantly lower across stations in terms of physicochemical properties than standards. However, there was a significant increase in electrical conductivity, total dissolved solids, and salinity. Ikpukulu had the highest EC (1917 uS/cm), while Kalio had the highest salinity (333.3 ppm). All stations had significant decreases in dissolved oxygen (DO) and biological oxygen demand (BOD), with Ogoloma having the lowest values (DO: 3.2 mg/L, BOD: 2.9 mg/L). Copper and chromium levels were significantly higher than the standards in all stations, while cadmium levels were not significantly different from those in the standards. As compared with the standards, copper levels in water samples were considerably higher, especially in Ogoloma (2.03 mg/kg). Ogoloma had a higher concentration of chromium. Cadmium levels decreased significantly at all stations for the mudskipper (P. papilio). The copper levels in Ogoloma and the chromium levels in Ikpukulu were significantly higher than those in standards. The results of the study suggest an increase in heavy metal concentrations in the mangrove swamp region, emphasising the need for proactive measures to mitigate activities that may adversely affect the aquatic ecosystem and the communities that depend on it.