To be a reliable predictor of response, tracer uptake should reflect changes in the amount of active tumor cells. However, uptake of 18 F-FDG, the most commonly used PET tracer, is disturbed by the inflammatory cells that appear early after cytotoxic therapy. The first aim of this study was to investigate whether 39-18 F-fluoro-39-deoxy-L-thymidine ( 18 F-FLT), a marker of cellular proliferation, is a better tracer for response assessment early after cytotoxic therapy. A second objective of this study was to investigate whether 18 F-FDG and 18 F-FLT responses were comparable early after mammalian target of rapamycin (mTOR) inhibition, as an example of proliferation-targeting therapies. Methods: Severe combined immunodeficient mice were subcutaneously inoculated with Granta-519 cells, a human cell line derived from a leukemic mantle cell lymphoma. Half the mice were treated with cyclophosphamide and the other half with mTOR inhibition. 18 F-FDG and 18 F-FLT uptake was evaluated by small-animal PET on day 0 (D0; before treatment), D11, D12, D14, D17, D19, D111, and D114. At each time point, 2 mice of each treatment condition were sacrificed, and tumors were excised for histopathology. Results: After cyclophosphamide, 18 F-FDG and 18 F-FLT uptake decreased, with a maximum reduction of 229% for 18 F-FDG and 225% for 18 F-FLT uptake at D12, compared with baseline. Although 18 F-FDG uptake increased from D14 on, with a maximum on D17, 18 F-FLT uptake remained virtually stable. Histology showed an increase in apoptotic or necrotic tumor fraction, followed by an influx of inflammatory cells. In mTOR-inhibited mice, 18 F-FDG uptake dropped until D12 after therapy (243%) but increased at D14 (227%) to form a plateau on D17 and D19 (214% and 216%, respectively). Concurrently, 18 F-FLT uptake decreased to 231% on D12, followed by an increase with a peak value of 112% on D17, after which 18 F-FLT uptake decreased again. Cyclin D1 expression dropped from D11 until D14 and returned to baseline at D17. Conclusion: Because 18 F-FLT uptake is not significantly influenced by the temporary rise in inflammatory cells early after cyclophosphamide, it more accurately reflects tumor response. However, a formerly unknown temporary rise in 18 F-FLT uptake a few days after the administration of mTOR inhibition was defined, which makes it clear that drug-specific responses have to be considered when using PET for early treatment monitoring.